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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015840088.1_cds_XP_016507507.1_20623
CDS Infomation

[gene=LOC107825191] [db_xref=GeneID:107825191] [protein=nuclear pore complex protein NUP85-like] [protein_id=XP_016507507.1] [location=join(3856..4244,6495..6597,6694..6804,6921..7004,7396..7467,7592..7648,8762..8881,8950..9150,9299..9409,9494..9531,9642..9798,10480..10581,10717..10773,10944..11090,11896..11966,12071..12158,12464..12520,13926..14120)] [gbkey=CDS]
Sequence

ATGCCAGGTCTGACGTCAGAGTCCGACGACCTTGCAATGGTCCCAGTCTCGTCGGAGCCG
GAAAATCATCCGGCGGTCATCTATCCTCTCCATCACGGTCTCAAATCCCCGGTTCATCGA
CTCTCCATTTCCTGGGCGCGTGGCAACACTCTCCAAGTCTCAGTTCTCGGGAAACCTCAG
TTGGACACGGCGACAGACGTAGACGGCGGCGAGAGTGGCGGCGGTAGAGTGGTGGAGGTG
AAGCTGAGTAACAGCGGAGATGAGGTAGTTGATGCCGCAAGATGGAGGAGAATAGCTTAC
GGTTCCGTCACTCCTTTCGCGCTTCTTCAGAGCCGCAAACATTCTCTGTCTGCTATGTCG
TTGGATAACCCTCCTTACAAGGCACAGTGGTGGGAGCATGTCATAGAGTACGGCAAAGAG
ATAAATTCTCTGCTCAGTGATCGAAAATCACCTCCTAGATCAATTATTGAAGATCCCAAG
TCGGTAGTAAACGAAACTGCAGAGCCGATGTGTTTGAAAGCTGCGTGGGAGCTTCTGGAG
ATATTTTATGTAGACAAGCAATCTCAATCCTGGATTCCCGAACGTTTGCTAGATTGGTTA
GCTGACTACGATCCTTTATTCTCGGGAACTGTACCAACTATTCATTCAAAGCTTGTGGAT
TTTCAGCAGGAACTTGCTGACGTACAGGTTGTTGAAGAAGATCCTAACTACTGGGAAGCA
ATAGCATCAGCATTGTCAGTTGGCTGGCTGGGAACTGTGGCAAAACTGCTGCGCTTGCAT
GGCTCTTACCGGTTTGATCAGTTAGCTAGTCGTGAGACAGAGAATGGACTGGTTGAAGCA
GTTGCTGTTCTTATATCCAAGATGCCTAGAATGCGTCCTAATCTGAGAGAAGAAAATTTA
AGCGAGTGTTACAAAACCAAGCCTGATTTCATGAAGGCTTGGGAGAAGTGGAGGGCACAA
ATGACTAAACTGGACTGCAGTTCGTACTGGCTTCAATGTGATCACCAGCAGACTAGAGAA
GGGCTAAAAAATTTGATCCAGATCATGTTGGGAAATCCTAGTGTTCTATCAAATGCAACT
TTCAACTGGATGGAGCTTTTTATATCCCATTTCTTGTACGTTAGGCCATTTACTGCGGGT
CTAGAGAGCATGTACAATTTAGCTCAGAAGTGCATTCAATTAAAACCAGTTTCCAGCCCC
CATAAGCTGTTTGGTCTTGTACTTGGCATTCTTGGAGAAAATACTGAGGTTGTTCTAGCA
GAGTGCTCAAGATCATTTGGCCCATGGATGATGGCACATGCTGTAGAGTTGTTGACAGCT
GGGAGTACTCATGCGGAAATTCTTTTGCATGAAGAGCAGTCCAAACTGGGGGGAATCAGC
ATAGAAGAGCTCCATAAACTTGTATATGCACAAGTTCTGTCTTCTCATGCGTTCACATGG
CAAATTGCTCCAATATACTTGACTTCATGCATAAAGCAAGGGATTGGATTATTGGAGAAT
TTGCTTTACAAGCAGCCTGTACAGCATAGTCAAATTCTGTTAAAGAGTATAGAGATCTGC
CGTCTGTATGAACTTGACACCATAAGTTCAAACATAATGAGGATTGCTGGTATGCATCAC
TGGAAACATGGGAGAAAAGGCTCTGGTGTCTTTTGGCTGCAGCAAGCTCGAGATGAATTT
CGTTTAAACAGAATTGCCAAACAATTATTTGATTTCGTGGGGAAGTCAGTTTCCGATGAA
GGATTCAAGCAATGGGAAGGTCTGATAGAGTTGCTGGGTTCTGAGCCTAGAACTGCTGGC
GGTCTTGAGTTTCTGAACAAGTACAGGGATTTTAGGAGATCCCTGCTGCAGGTTCATGGT
GATACACCCACTGATGGTGCTCATAATGCAGCTGAAGCTCTCGTCTCTCTCATGAAAAAT
CCTTCCACGCCTCAACGCTTTTGGTTACCTCTTCTATATGATTCATTGAAATTGTTAAAC
TGGCAGGAGCGACCTTTGCTTAATGTCTCTCAAACTCAGCTTCTCTTGAATAAACTGCAA
GAGTTGTCCATGGCAAGATTGAGGCCGGACTTTGTTGAAGCTGACTTGCCATCTGATTCC
TTGAGCTCTGTCAGACTGGCACTTGCCACTAACTTGGGTCGTGCAATCCTTGAAGAGTGA

Peptide Sequence

PEP ID

XP_016507507.1
PEP Infomation

PREDICTED: nuclear pore complex protein NUP85-like [Nicotiana tabacum]
Sequence

MPGLTSESDDLAMVPVSSEPENHPAVIYPLHHGLKSPVHRLSISWARGNTLQVSVLGKPQ
LDTATDVDGGESGGGRVVEVKLSNSGDEVVDAARWRRIAYGSVTPFALLQSRKHSLSAMS
LDNPPYKAQWWEHVIEYGKEINSLLSDRKSPPRSIIEDPKSVVNETAEPMCLKAAWELLE
IFYVDKQSQSWIPERLLDWLADYDPLFSGTVPTIHSKLVDFQQELADVQVVEEDPNYWEA
IASALSVGWLGTVAKLLRLHGSYRFDQLASRETENGLVEAVAVLISKMPRMRPNLREENL
SECYKTKPDFMKAWEKWRAQMTKLDCSSYWLQCDHQQTREGLKNLIQIMLGNPSVLSNAT
FNWMELFISHFLYVRPFTAGLESMYNLAQKCIQLKPVSSPHKLFGLVLGILGENTEVVLA
ECSRSFGPWMMAHAVELLTAGSTHAEILLHEEQSKLGGISIEELHKLVYAQVLSSHAFTW
QIAPIYLTSCIKQGIGLLENLLYKQPVQHSQILLKSIEICRLYELDTISSNIMRIAGMHH
WKHGRKGSGVFWLQQARDEFRLNRIAKQLFDFVGKSVSDEGFKQWEGLIELLGSEPRTAG
GLEFLNKYRDFRRSLLQVHGDTPTDGAHNAAEALVSLMKNPSTPQRFWLPLLYDSLKLLN
WQERPLLNVSQTQLLLNKLQELSMARLRPDFVEADLPSDSLSSVRLALATNLGRAILEE

Transcript Sequence

Gene sequence data has not been registered.